Publications

Submitted / preprints

  • UMAP reveals composite patterns and resolves visualization artifacts in microbiome data
    G. Armstrong, C. Martino, G. Rahman, A. Gonzalez , Y. Vázquez-Baeza, G. Mishne and R. Knight

  • GraFT: Graph Filtered Temporal Dictionary Learning for Functional Neural Imaging
    A. S. Charles, N. Cermak, R. Affan, B. Scott, J. Schiller and G. Mishne [bioRxiv] [code]

  • LDLE: Low Distortion Local Eigenmaps
    D. Kohli, A. Cloninger and G. Mishne [arXiv]

  • Multi-scale Affinities with Missing Data: Estimation and Applications
    M. Zhang, G. Mishne and E. C. Chi

  • Provable Robustness by Geometric Regularization of ReLU Networks
    C. Holtz, C. Shi and G. Mishne

  • Automated cellular structure extraction in biological images with applications to calcium imaging data
    G. Mishne, R. R. Coifman, M. Lavzin and J. Schiller
    [bioRxiv]

Journal Publications

Conference Proceedings

Peer-reviewed Abstracts / Workshop papers

  • LDLE: Low Distortion Local Eigenmaps
    D. Kohli, A. Cloninger and G. Mishne
    ICLR 2021 Workshop ICLR Geometrical and Topological Representation Learning

  • Multi-session Alignment for Longitudinal Calcium Imaging
    S. Yadav, R. Hattori, E-J. Hwang, A. Ramot, A. Wu, T. Komiyama and G. Mishne,
    accepted to Computational and Systems Neuroscience (COSYNE) 2021

  • Embedding Disentangled Dynamics from Behavioral Videos
    C. Shi, S. Levy, M. Lavzin, J. Schiller and G. Mishne,
    accepted to Computational and Systems Neuroscience (COSYNE) 2021

  • The PHATE of learning networks
    S. Gigante, A. Charles, S. Krishnaswamy and G. Mishne
    Computational and Systems Neuroscience (COSYNE) 2020

  • Hierarchical Tensor Partitioning and Tiling for Learning Coupled Multiscale Neuronal Dynamics
    G. Mishne, H. Benisty, M. Lavzin, S. Levy, R. Talmon, R. Meir, J. Schiller and R. Coifman,
    Computational and Systems Neuroscience (COSYNE) 2020

  • Spatially-filtered temporal dictionary learning for calcium imaging analysis
    G. Mishne, N. Cermak, J. Schiller and A. S. Charles
    SPARS 2019

  • Graph-filtered temporal dictionary learning for calcium imaging analysis
    G. Mishne, B. Scott, S. Thiberge, N. Cermak, J. Schiller, C. Brody, D. W. Tank, and A. S. Charles
    Oral presentation at Annual Computational Neuroscience Meeting (CNS*2019)

  • Temporal dictionary learning for calcium imaging analysis
    G. Mishne, B. Scott, S. Thiberge, N. Cermak, J. Schiller, C. Brody, D. W. Tank, and A. S. Charles
    Computational and Systems Neuroscience (COSYNE) 2019

  • Local diffusion geometry for automated cellular structure extraction in calcium imaging data
    G. Mishne, R. R. Coifma, M. Lavzin and J. Schiller
    Computational and Systems Neuroscience (COSYNE) 2018